Pseudomonas aeruginosa PAO1, PA0230 (pcaB)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0015976	carbon utilization	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Biological Process	GO:0044248	cellular catabolic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Biological Process	GO:0019619	3,4-dihydroxybenzoate catabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02426	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48557	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae01220	Degradation of aromatic compounds	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCyc	PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY	protocatechuate degradation II (ortho-cleavage pathway)	19.5	ECO:0000250 sequence similarity evidence used in manual assertion	12867747
KEGG	pae01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCAP		Aromatic compound catabolism		ECO:0000037 not_recorded
KEGG	pae00362	Benzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	234	258	3.7E-12
FunFam	G3DSA:1.10.40.30:FF:000007	Adenylosuccinate lyase	-	-	367	448	8.7E-24
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	234	261	8.8E-25
FunFam	G3DSA:1.20.200.10:FF:000014	3-carboxy-cis,cis-muconate cycloisomerase	-	-	2	364	0.0
SMART	SM00998	ADSL_C_2	IPR019468	Adenylosuccinate lyase C-terminal	367	446	5.4E-29
PANTHER	PTHR43172	ADENYLOSUCCINATE LYASE	-	-	6	451	8.2E-122
Gene3D	G3DSA:1.20.200.10	Fumarase/aspartase (Central domain)	-	-	3	366	2.9E-118
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	144	164	3.7E-12
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	279	295	8.8E-25
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	149	167	8.8E-25
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	279	295	3.7E-12
Coils	Coil	Coil	-	-	342	362	-
Gene3D	G3DSA:1.10.40.30	-	-	-	367	453	2.7E-30
Pfam	PF00206	Lyase	IPR022761	Fumarate lyase, N-terminal	16	304	1.1E-67
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	103	125	3.7E-12
NCBIfam	TIGR02426	JCVI: 3-carboxy-cis,cis-muconate cycloisomerase	IPR012789	3-carboxy-cis,cis-muconate cycloisomerase-like	9	352	0.0
CDD	cd01597	pCLME	-	-	9	448	0.0
Coils	Coil	Coil	-	-	119	146	-
SUPERFAMILY	SSF48557	L-aspartase-like	IPR008948	L-Aspartase-like	9	449	2.2E-124
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	104	122	8.8E-25
Pfam	PF10397	Adenylosuccinate lyase C-terminus	IPR019468	Adenylosuccinate lyase C-terminal	368	445	1.2E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.