Pseudomonas aeruginosa PAO1, PA0376 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 7698670 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 253 273 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 78 91 6.8E-18
Gene3D G3DSA:1.20.120.1810 - - - 16 123 2.4E-28
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 267 278 6.8E-18
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 49 280 4.5E-31
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 233 245 6.8E-18
FunFam G3DSA:1.20.120.1810:FF:000001 RNA polymerase sigma factor RpoH - - 15 123 2.0E-61
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 229 279 5.3E-16
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 17 41 1.1E-5
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 55 123 7.8E-16
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 252 267 6.8E-18
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 15 123 2.09E-39
FunFam G3DSA:1.10.10.10:FF:000285 RNA polymerase sigma factor RpoH - - 213 282 5.0E-33
NCBIfam TIGR02392 JCVI: RNA polymerase sigma factor RpoH IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 16 282 9.9E-124
Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. IPR012759 RNA polymerase sigma factor RpoH, proteobacteria 2 284 54.24894
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 211 282 1.3E-14
PANTHER PTHR30376 SIGMA FACTOR RPOH HEAT SHOCK RELATED - - 7 282 2.0E-119
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 197 282 3.18E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.