Pseudomonas aeruginosa PAO1, PA0376 (rpoH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
AlgU binding site 420608 420643 +
Details
transcriptional initiation site (+1) 420643 420643 +
Details
rpoH promoter 1 420613 420662 +
9159526 Details
rpoH promoter 2 420602 420651 +
9159526 Details
rpoH promoter 3 420597 420646 +
9159526 Details
AlgU binding site 420608 420643 +
Details
AlgU binding site 420608 420643 +
11807066 Details
Shine-Dalgarno sequence 420672 420676 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: AAAACCGCACCC-N5-GGGTGCGGTTTT 421553 421581 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Rho-independent transcription terminator TERM 84 421557 421577 + ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details