Pseudomonas aeruginosa PAO1, PA0575 (rmcA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13426 PAS domain IPR000014 PAS domain 448 548 4.0E-5
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 687 804 5.5E-20
SUPERFAMILY SSF53850 39 256 1.59E-49
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 838 971 37.682
SMART SM00091 IPR000014 PAS domain 312 380 0.0026
Gene3D G3DSA:3.30.450.20 427 548 9.4E-21
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 560 682 2.3E-16
Pfam PF13426 PAS domain IPR000014 PAS domain 694 795 7.3E-16
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 804 968 1.6E-44
SMART SM00086 IPR001610 PAC motif 510 550 3.5
Gene3D G3DSA:3.30.70.270 807 981 4.3E-64
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 813 970 4.79E-54
Gene3D G3DSA:3.40.190.10 28 254 8.1E-68
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 385 435 11.571
Pfam PF00563 EAL domain IPR001633 EAL domain 985 1220 7.8E-77
SMART SM00086 IPR001610 PAC motif 386 426 1.0E-5
SMART SM00062 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 38 258 2.2E-32
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 310 369 9.17
CDD cd00130 PAS IPR000014 PAS domain 331 423 8.75272E-7
SMART SM00091 IPR000014 PAS domain 438 505 3.2E-6
Gene3D G3DSA:3.30.450.20 678 806 9.3E-36
Pfam PF08447 PAS fold IPR013655 PAS fold-3 336 408 2.9E-10
CDD cd01948 EAL IPR001633 EAL domain 985 1224 2.2089E-114
CDD cd00130 PAS IPR000014 PAS domain 448 547 9.01206E-7
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 423 548 2.44E-19
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 509 559 8.514
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 308 432 3.0E-14
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 688 795 5.24E-29
CDD cd01007 PBP2_BvgS_HisK_like 36 255 1.88948E-80
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 984 1231 1.7E-89
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 754 806 10.401
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 982 1232 7.6E-103
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 808 965 6.7E-54
CDD cd00130 PAS IPR000014 PAS domain 692 794 7.74261E-13
Gene3D G3DSA:3.30.450.20 558 673 2.4E-21
Pfam PF13426 PAS domain IPR000014 PAS domain 572 674 1.2E-8
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 980 1234 82.353
Gene3D G3DSA:3.30.450.20 321 426 1.0E-22
SMART SM00052 IPR001633 EAL domain 979 1225 1.3E-123
Coils Coil 286 320 -
SMART SM00091 IPR000014 PAS domain 562 629 1.1E-6
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 560 635 13.29
SMART SM00091 IPR000014 PAS domain 683 749 6.9E-8
Gene3D G3DSA:3.40.190.10 123 217 8.1E-68
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 547 673 1.64E-19
CDD cd00130 PAS IPR000014 PAS domain 572 672 6.83292E-8
CDD cd01949 GGDEF IPR000160 GGDEF domain 809 966 2.03206E-70
SMART SM00267 IPR000160 GGDEF domain 797 969 2.1E-71
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 681 727 13.419
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 436 556 5.7E-12
SMART SM00086 IPR001610 PAC motif 635 675 83.0
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 297 424 8.38E-21
SMART SM00086 IPR001610 PAC motif 755 797 5.5E-5
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 39 256 4.9E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.