Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0622
|
Name |
|
Replicon | chromosome |
Genomic location | 681394 - 682554 (+ strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
Comment | Localication to outer membrane vesicle confirmed in three separate studies (PMID:22909304, PMID:21751344 and PMID:26303878). |
RefSeq | NP_249313.1 |
GI | 15595819 |
Affymetrix | PA0622_at |
DNASU | PaCD00006275 |
Entrez | 877994 |
GenBank | AAG04011.1 |
INSDC | AAG04011.1 |
NCBI Locus Tag | PA0622 |
protein_id(GenBank) | gb|AAG04011.1|AE004498_6|gnl|PseudoCAP|PA0622 |
TIGR | NTL03PA00623 |
UniParc | UPI00000D4266 |
UniProtKB Acc | G3XD39 |
UniProtKB ID | G3XD39_PSEAE |
UniRef100 | UniRef100_G3XD39 |
UniRef50 | UniRef50_Q02TE1 |
UniRef90 | UniRef90_Q02TE1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
probable bacteriophage protein
|
Synonyms | |
Evidence for Translation |
Detected using LC-MS/MS (41.21 kDa, PMID:21751344)
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -5.36 |
Kyte-Doolittle Hydrophobicity Value | -0.012 |
Molecular Weight (kDa) | 41.2 |
Isoelectric Point (pI) | 5.08 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6U5B | ANTIMICROBIAL PROTEIN | 08/27/19 | CryoEM Structure of Pyocin R2 - precontracted - baseplate | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 3.5 | ELECTRON MICROSCOPY | 100.0 |
6U5F | ANTIMICROBIAL PROTEIN | 08/27/19 | CryoEM Structure of Pyocin R2 - precontracted - collar | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 3.8 | ELECTRON MICROSCOPY | 100.0 |
6U5J | ANTIMICROBIAL PROTEIN | 08/27/19 | CryoEM Structure of Pyocin R2 - postcontracted - collar | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 3.5 | ELECTRON MICROSCOPY | 100.0 |
6U5K | ANTIMICROBIAL PROTEIN | 08/27/19 | CryoEM Structure of Pyocin R2 - postcontracted - baseplate | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 3.5 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 152 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000605 (327 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0622
Search term: probable bacteriophage protein
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|
Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix.
Toyofuku M, Roschitzki B, Riedel K, Eberl L
J Proteome Res 2012 Oct 5;11(10):4906-15
PubMed ID: 22909304
|
Proteome Profiles of Outer Membrane Vesicles and Extracellular Matrix of Pseudomonas aeruginosa Biofilms.
Couto N, Schooling SR, Dutcher JR, Barber J
J Proteome Res 2015 Oct 2;14(10):4207-22
PubMed ID: 26303878
|