Pseudomonas aeruginosa PAO1, PA0733

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016866 intramolecular transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 1 91 9.81E-15
CDD cd00165 S4 - - 1 66 3.26256E-11
Gene3D G3DSA:3.30.70.580 - IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal 63 227 5.7E-51
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 1 42 9.8E-9
Gene3D G3DSA:3.30.70.1560 - IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain 128 209 5.7E-51
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 1 58 5.2E-8
FunFam G3DSA:3.30.70.1560:FF:000001 Pseudouridine synthase - - 128 209 8.7E-22
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 1 62 8.6E-16
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 61 227 5.44E-43
CDD cd02553 PseudoU_synth_RsuA - - 61 227 1.7944E-91
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 62 190 1.2E-12
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 1 227 7.5E-47
NCBIfam TIGR00093 JCVI: pseudouridine synthase IPR000748 Pseudouridine synthase, RsuA/RluB/E/F 66 223 2.6E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.