Pseudomonas aeruginosa PAO1, PA0886

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00786
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF006066 HI0050 IPR004681 TRAP transporter large membrane protein DctM 1 427 0.0
PANTHER PTHR33362 SIALIC ACID TRAP TRANSPORTER PERMEASE PROTEIN SIAT-RELATED IPR004681 TRAP transporter large membrane protein DctM 1 426 0.0
NCBIfam TIGR00786 JCVI: TRAP transporter large permease subunit IPR004681 TRAP transporter large membrane protein DctM 17 421 0.0
Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit 7 415 2.3E-123

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.