Pseudomonas aeruginosa PAO1, PA0888 (aotJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0097640 L-ornithine import across plasma membrane
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 18833300 Reviewed by curator
Cellular Component GO:0005615 extracellular space
IDA
Inferred from Direct Assay 		ECO:0001230
mass spectrometry evidence used in manual assertion		 25488299 Reviewed by curator
Biological Process GO:1902023 L-arginine transport
IGI
Inferred from Genetic Interaction 		ECO:0000316
genetic interaction evidence used in manual assertion		 9791103 Reviewed by curator
Biological Process GO:0097638 L-arginine import across plasma membrane
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 18833300 Reviewed by curator
Biological Process GO:0015822 ornithine transport
IGI
Inferred from Genetic Interaction 		ECO:0000316
genetic interaction evidence used in manual assertion		 9791103 Reviewed by curator
Biological Process GO:0006810 transport
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01096
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 27 250 9.7E-81
PANTHER PTHR35936 MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F - - 5 251 1.8E-50
FunFam G3DSA:3.40.190.10:FF:000245 ABC transporter substrate-binding protein - - 111 211 2.1E-66
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 25 254 2.1E-81
CDD cd13703 PBP2_HisJ_LAO - - 24 251 0.0
NCBIfam TIGR01096 JCVI: lysine/arginine/ornithine ABC transporter substrate-binding protein IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter 4 251 4.5E-94
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 26 252 1.3E-65
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 1 255 3.03E-70
Gene3D G3DSA:3.40.190.10 - - - 111 211 9.7E-81

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.