Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0018339 | peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0035596 | methylthiotransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00919
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006400 | tRNA modification |
Inferred from Sequence Model
Term mapped from: InterPro:SFLDG01061
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0051536 | iron-sulfur cluster binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016740 | transferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0051539 | 4 iron, 4 sulfur cluster binding |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 380 | 440 | 4.0E-24 |
Gene3D | G3DSA:3.40.50.12160 | - | IPR038135 | Methylthiotransferase, N-terminal domain superfamily | 7 | 125 | 1.3E-27 |
Gene3D | G3DSA:3.80.30.20 | tm_1862 like domain | IPR023404 | Radical SAM, alpha/beta horseshoe | 137 | 379 | 1.1E-70 |
Pfam | PF04055 | Radical SAM superfamily | IPR007197 | Radical SAM | 145 | 322 | 1.0E-25 |
FunFam | G3DSA:2.40.50.140:FF:000060 | Ribosomal protein S12 methylthiotransferase RimO | - | - | 380 | 440 | 3.0E-29 |
Pfam | PF18693 | TRAM domain | IPR002792 | TRAM domain | 379 | 440 | 3.9E-24 |
FunFam | G3DSA:3.40.50.12160:FF:000002 | Ribosomal protein S12 methylthiotransferase RimO | - | - | 7 | 124 | 2.1E-53 |
FunFam | G3DSA:3.80.30.20:FF:000001 | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2 | - | - | 137 | 379 | 3.2E-89 |
CDD | cd01335 | Radical_SAM | - | - | 143 | 345 | 5.05438E-10 |
NCBIfam | TIGR00089 | JCVI: MiaB/RimO family radical SAM methylthiotransferase | IPR005839 | Methylthiotransferase | 7 | 437 | 2.3E-103 |
Hamap | MF_01865 | Ribosomal protein S12 methylthiotransferase RimO [rimO]. | IPR005840 | Ribosomal protein uS12 methylthiotransferase RimO | 6 | 439 | 61.878036 |
SMART | SM00729 | MiaB | IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | 139 | 365 | 2.6E-51 |
SFLD | SFLDF00274 | ribosomal protein S12 methylthiotransferase (RimO-like) | IPR005840 | Ribosomal protein uS12 methylthiotransferase RimO | 4 | 439 | 0.0 |
SFLD | SFLDG01061 | methylthiotransferase | IPR005839 | Methylthiotransferase | 4 | 439 | 0.0 |
SFLD | SFLDG01082 | B12-binding domain containing | - | - | 123 | 364 | 6.3E-28 |
Pfam | PF00919 | Uncharacterized protein family UPF0004 | IPR013848 | Methylthiotransferase, N-terminal | 7 | 96 | 1.2E-20 |
SUPERFAMILY | SSF102114 | Radical SAM enzymes | - | - | 109 | 370 | 3.53E-53 |
PANTHER | PTHR43837 | RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO | IPR005840 | Ribosomal protein uS12 methylthiotransferase RimO | 1 | 440 | 0.0 |
NCBIfam | TIGR01125 | JCVI: 30S ribosomal protein S12 methylthiotransferase RimO | IPR005840 | Ribosomal protein uS12 methylthiotransferase RimO | 7 | 436 | 0.0 |