Pseudomonas aeruginosa PAO1, PA1015

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00346 IPR005471 Transcription regulator IclR, N-terminal 15 104 1.7E-12
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 89 258 4.4E-24
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 13 87 6.7E-14
ProSiteProfiles PS51078 IclR effector binding domain profile. IPR014757 Transcription regulator IclR, C-terminal 78 257 17.866
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 17 65 1.4E-12
SUPERFAMILY SSF55781 73 255 6.54E-26
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 134 253 3.2E-10
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 15 86 4.17E-12
ProSiteProfiles PS51077 IclR-type HTH domain profile. IPR005471 Transcription regulator IclR, N-terminal 15 77 13.948

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.