Pseudomonas aeruginosa PAO1, PA1110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.2350.10:FF:000026 RNA-binding protein S4 - - 62 235 1.4E-109
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 65 235 2.47E-20
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 62 235 6.9E-22
FunFam G3DSA:3.10.290.10:FF:000034 RNA-binding protein S4 - - 2 60 8.0E-32
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 5 49 1.44E-10
CDD cd02555 PSSA_1 - - 60 236 3.65909E-95
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 3 231 1.5E-34
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 6 45 9.2E-7
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 5 65 3.4E-5
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 2 52 1.4E-12
CDD cd00165 S4 - - 5 61 6.42094E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.