Pseudomonas aeruginosa PAO1, PA1294 (rnd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0008728 GTP diphosphokinase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00474
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00474
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00474
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033890 ribonuclease D activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00341 hrdc7 IPR002121 HRDC domain 212 292 1.1E-11
Pfam PF01612 3'-5' exonuclease IPR002562 3'-5' exonuclease domain 6 173 7.4E-39
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 5 212 1.86E-60
PANTHER PTHR47649 RIBONUCLEASE D - - 2 373 0.0
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 5 193 1.0E-60
CDD cd06142 RNaseD_exo - - 14 190 3.43289E-73
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 197 296 4.7E-27
SMART SM00474 35exoneu6 IPR002562 3'-5' exonuclease domain 6 174 4.6E-35
NCBIfam TIGR01388 JCVI: ribonuclease D IPR006292 Ribonuclease D 8 373 0.0
Hamap MF_01899 Ribonuclease D [rnd]. IPR006292 Ribonuclease D 6 372 43.258774
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 197 303 2.62E-29
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 303 374 8.0E-9
Pfam PF00570 HRDC domain IPR002121 HRDC domain 215 282 2.1E-17
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 297 372 9.53E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.