Pseudomonas aeruginosa PAO1, PA1441
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Shine-Dalgarno sequence | 1570319 | 1570322 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details | |
| Shine-Dalgarno sequence | 1570485 | 1570488 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GTCCCGCGAA-N3-TTCGCGGGAC | 1570665 | 1570687 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| RpoN binding site | 1571958 | 1571972 | + |
|
12218010 | Details |
| transcriptional initiation site (+1) | 1571979 | 1571979 | + |
|
12218010 | Details |
| Rho-independent transcription terminator TERM 362 | 1571805 | 1571822 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |