Pseudomonas aeruginosa PAO1, PA2489

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 24 135 1.22E-21
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 183 265 2.7E-18
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 219 266 2.64E-7
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 18 146 1.6E-27
Gene3D G3DSA:1.10.10.60 - - - 167 267 9.3E-26
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 170 217 4.84E-9
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 189 266 1.2E-19
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 1 267 4.5E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.