Pseudomonas aeruginosa PAO1, PA3138 (uvrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006289 nucleotide-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR24029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR24029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02151
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04851
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR24029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR24029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009380 excinuclease repair complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR24029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 8 424 3.8E-30
NCBIfam TIGR00631 JCVI: excinuclease ABC subunit UvrB IPR004807 UvrABC system, subunit B 3 664 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 321 409 7.2E-18
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 458 544 8.3E-19
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 237 1.7E-88
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 435 542 5.1E-17
Gene3D G3DSA:6.10.140.240 - - - 249 314 2.0E-30
FunFam G3DSA:3.40.50.300:FF:000477 UvrABC system protein B - - 229 412 9.9E-89
Gene3D G3DSA:4.10.860.10 UVR domain - - 626 669 1.2E-16
PANTHER PTHR24029 UVRABC SYSTEM PROTEIN B IPR004807 UvrABC system, subunit B 3 668 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 36 581 1.61E-36
CDD cd17916 DEXHc_UvrB - - 4 412 0.0
Coils Coil Coil - - 256 283 -
Pfam PF04851 Type III restriction enzyme, res subunit IPR006935 Helicase/UvrB, N-terminal 11 118 6.2E-9
Coils Coil Coil - - 646 670 -
Pfam PF17757 UvrB interaction domain IPR041471 UvrB, interaction domain 158 248 1.8E-33
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 412 588 1.1E-59
SUPERFAMILY SSF46600 C-terminal UvrC-binding domain of UvrB IPR036876 UVR domain superfamily 626 667 1.7E-11
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 413 0.0
Pfam PF12344 Ultra-violet resistance protein B IPR024759 UvrB, YAD/RRR-motif-containing domain 550 592 2.7E-22
CDD cd18790 SF2_C_UvrB - - 418 588 4.5145E-115
Hamap MF_00204 UvrABC system protein B [uvrB]. IPR004807 UvrABC system, subunit B 2 666 43.738529
Pfam PF02151 UvrB/uvrC motif IPR001943 UVR domain 632 665 4.1E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.