Pseudomonas aeruginosa PAO1, PA3162 (rpsA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006412 translation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9677288 Reviewed by curator
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00717
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00717
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00717
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00717
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd05691 S1_RPS1_repeat_ec6 - - 451 523 1.15858E-29
NCBIfam TIGR00717 JCVI: 30S ribosomal protein S1 IPR000110 Small ribosomal subunit protein bS1 3 520 0.0
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 212 233 1.3E-88
FunFam G3DSA:2.40.50.140:FF:000016 30S ribosomal protein S1 - - 358 444 8.0E-47
FunFam G3DSA:2.40.50.140:FF:000011 30S ribosomal protein S1 - - 270 357 1.0E-48
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 275 347 4.4E-21
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 189 277 1.94E-27
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 6 98 8.1E-20
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 103 171 1.3E-8
FunFam G3DSA:2.40.50.140:FF:000017 30S ribosomal protein S1 - - 98 181 8.2E-49
Coils Coil Coil - - 517 537 -
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 19 85 3.3E-7
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 39 53 1.3E-88
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 190 260 1.4E-28
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 267 356 5.5E-29
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 449 520 2.6E-21
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 99 183 5.5E-8
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 103 171 1.5E-11
CDD cd04465 S1_RPS1_repeat_ec2_hs2 - - 105 171 1.62475E-28
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 429 536 8.95E-24
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 21 39 1.3E-88
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 189 260 3.6E-21
CDD cd05687 S1_RPS1_repeat_ec1_hs1 - - 21 87 2.47572E-13
CDD cd05689 S1_RPS1_repeat_ec4 - - 274 345 6.67066E-40
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 108 124 1.3E-88
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 290 309 1.3E-88
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 342 440 7.46E-23
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 104 185 8.95E-15
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 448 520 5.1E-15
PANTHER PTHR10724 30S RIBOSOMAL PROTEIN S1 - - 276 360 0.0
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 362 434 9.7E-21
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 184 265 8.3E-28
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 19 87 2.0E-5
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 357 444 2.1E-25
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 275 347 1.8E-26
FunFam G3DSA:2.40.50.140:FF:000018 30S ribosomal protein S1 - - 183 267 9.0E-49
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 255 355 6.56E-26
FunFam G3DSA:2.40.50.140:FF:000021 30S ribosomal protein S1 - - 6 97 3.8E-45
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 445 528 6.3E-22
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 361 434 2.3E-18
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 1 112 1.33E-20
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 126 143 1.3E-88
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 84 103 1.3E-88
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 155 175 1.3E-88
CDD cd05688 S1_RPS1_repeat_ec3 - - 191 258 1.67183E-36
PRINTS PR00681 Ribosomal protein S1 signature IPR035104 Ribosomal protein S1-like 330 348 1.3E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.