Pseudomonas fluorescens SBW25, PFLU6021

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.110.20 - IPR036624 Hcp1-like superfamily 1 161 2.7E-61
PANTHER PTHR36152 CYTOPLASMIC PROTEIN-RELATED - - 1 160 2.0E-49
SUPERFAMILY SSF141452 Hcp1-like IPR036624 Hcp1-like superfamily 2 160 1.57E-58
Pfam PF05638 Type VI secretion system effector, Hcp IPR008514 Type VI secretion system effector Hcp 6 136 9.9E-43
NCBIfam TIGR03344 JCVI: type VI secretion system tube protein TssD/Hcp IPR008514 Type VI secretion system effector Hcp 1 142 1.8E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.