Pseudomonas putida S16, PPS_1330

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03160
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03160
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc superpathway of adenosylcobalamin salvage from cobinamide II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc 5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc 5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppt00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc 2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc 5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.10210:FF:000001 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase - - 57 329 1.3E-109
Pfam PF02277 Phosphoribosyltransferase IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 11 346 0.0
Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, bacterial type 12 348 37.538429
PANTHER PTHR43463 NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 5 348 5.5E-113
Gene3D G3DSA:3.40.50.10210 - IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily 57 329 0.0
Gene3D G3DSA:1.10.1610.10 - IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal 11 339 0.0
CDD cd02439 DMB-PRT_CobT IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 29 344 3.8488E-129
NCBIfam TIGR03160 JCVI: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, bacterial type 13 346 0.0
SUPERFAMILY SSF52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily 5 346 1.14E-118

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.