Pseudomonas putida BIRD-1, PPUBIRD1_3208 (pheT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006432 phenylalanyl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00874
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00874
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000049 tRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02796
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004826 phenylalanine-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00283
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000287 magnesium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00874
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00874
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00970 Aminoacyl-tRNA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain 475 683 5.4E-56
CDD cd02796 tRNA_bind_bactPheRS IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain 45 146 1.39022E-49
SMART SM00874 B5_2 IPR005147 tRNA synthetase, B5-domain 403 472 1.2E-27
PANTHER PTHR10947 PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 IPR045060 Phenylalanine-tRNA ligase, class IIc, beta subunit 2 683 1.9E-71
Gene3D G3DSA:3.30.56.10 - - - 401 476 4.1E-23
Gene3D G3DSA:3.50.40.10 - IPR020825 Phenylalanyl-tRNA synthetase-like, B3/B4 196 395 8.7E-79
Pfam PF03484 tRNA synthetase B5 domain IPR005147 tRNA synthetase, B5-domain 406 472 1.6E-20
Pfam PF03147 Ferredoxin-fold anticodon binding domain IPR005121 Ferrodoxin-fold anticodon-binding domain 699 792 1.2E-26
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 404 476 5.95E-18
SUPERFAMILY SSF54991 Anticodon-binding domain of PheRS IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily 694 792 1.7E-28
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 487 690 3.4E-63
FunFam G3DSA:3.30.70.380:FF:000001 Phenylalanine--tRNA ligase beta subunit - - 700 793 2.0E-27
NCBIfam TIGR00472 JCVI: phenylalanine--tRNA ligase subunit beta IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit, bacterial type 1 792 0.0
FunFam G3DSA:3.30.56.10:FF:000002 Phenylalanine--tRNA ligase beta subunit - - 402 476 2.4E-23
FunFam G3DSA:3.50.40.10:FF:000001 Phenylalanine--tRNA ligase beta subunit - - 195 397 1.6E-82
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 39 153 2.7E-72
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 468 685 3.93E-54
SUPERFAMILY SSF56037 PheT/TilS domain - - 195 396 3.92E-72
CDD cd00769 PheRS_beta_core IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain 499 682 2.72933E-67
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 36 191 5.14E-49
Pfam PF03483 B3/4 domain IPR005146 B3/B4 tRNA-binding domain 211 384 2.4E-69
Gene3D G3DSA:3.30.70.380 - IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily 700 793 1.8E-24
Gene3D G3DSA:3.30.56.10 - - - 6 180 2.7E-72
FunFam G3DSA:2.40.50.140:FF:000045 Phenylalanine--tRNA ligase beta subunit - - 39 153 1.9E-44
SMART SM00873 B3_4_2 IPR005146 B3/B4 tRNA-binding domain 211 385 1.5E-93
SMART SM00896 FDX_ACB_2 IPR005121 Ferrodoxin-fold anticodon-binding domain 699 792 2.7E-39
Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit, bacterial type 1 786 47.483795
FunFam G3DSA:3.30.930.10:FF:000022 Phenylalanine--tRNA ligase beta subunit - - 489 690 5.7E-67
Pfam PF01588 Putative tRNA binding domain IPR002547 tRNA-binding domain 45 144 1.8E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.