Pseudomonas putida BIRD-1, PPUBIRD1_3210 (rplT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07026 Ribosomal_L20 IPR005813 Large ribosomal subunit protein bL20 6 111 5.59572E-52
Hamap MF_00382 50S ribosomal protein L20 [rplT]. IPR005813 Large ribosomal subunit protein bL20 2 115 30.960258
PANTHER PTHR10986 39S RIBOSOMAL PROTEIN L20 IPR005813 Large ribosomal subunit protein bL20 1 115 4.8E-40
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 12 41 5.4E-41
SUPERFAMILY SSF74731 Ribosomal protein L20 IPR035566 Ribosomal protein bL20, C-terminal 3 117 8.76E-50
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 42 71 5.4E-41
Pfam PF00453 Ribosomal protein L20 IPR005813 Large ribosomal subunit protein bL20 3 109 1.5E-48
NCBIfam TIGR01032 JCVI: 50S ribosomal protein L20 IPR005813 Large ribosomal subunit protein bL20 1 114 4.9E-51
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 75 101 5.4E-41
FunFam G3DSA:1.10.1900.20:FF:000001 50S ribosomal protein L20 - - 56 118 4.7E-30
Gene3D G3DSA:6.10.160.10 - - - 3 55 2.4E-26
Gene3D G3DSA:1.10.1900.20 Ribosomal protein L20 IPR035566 Ribosomal protein bL20, C-terminal 56 118 2.1E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.