Pseudomonas putida BIRD-1, PPUBIRD1_3221 (rbsR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01392
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00036 LacI bacterial regulatory protein HTH signature IPR000843 LacI-type HTH domain 13 23 5.1E-5
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 59 5.3E-16
SMART SM00354 laci3 IPR000843 LacI-type HTH domain 1 71 6.0E-31
PRINTS PR00036 LacI bacterial regulatory protein HTH signature IPR000843 LacI-type HTH domain 3 13 5.1E-5
Pfam PF00356 Bacterial regulatory proteins, lacI family IPR000843 LacI-type HTH domain 3 48 2.8E-17
Gene3D G3DSA:3.40.50.2300 - - - 160 288 2.3E-87
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 3 59 7.5E-19
Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IPR001761 Periplasmic binding protein/LacI sugar binding domain 60 318 1.2E-39
CDD cd01392 HTH_LacI IPR000843 LacI-type HTH domain 5 56 1.62406E-16
SUPERFAMILY SSF53822 Periplasmic binding protein-like I IPR028082 Periplasmic binding protein-like I 61 333 1.17E-89
PANTHER PTHR30146 LACI-RELATED TRANSCRIPTIONAL REPRESSOR - - 1 334 1.1E-118
Gene3D G3DSA:3.40.50.2300 - - - 62 306 2.3E-87

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.