Pseudomonas putida HB3267, B479_18560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 11 154 1.27E-41
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 15 151 3.0E-39
Gene3D G3DSA:2.40.50.180 - - - 34 143 1.2E-44
PANTHER PTHR22617 CHEMOTAXIS SENSOR HISTIDINE KINASE-RELATED IPR039315 Chemotaxis protein CheW 7 158 5.1E-48
SMART SM00260 chew_2 IPR002545 CheW-like domain 11 148 5.0E-53
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 17 142 1.2E-44
FunFam G3DSA:2.40.50.180:FF:000001 Chemotaxis protein CheW - - 34 101 7.8E-40
CDD cd00732 CheW - - 13 152 5.36369E-61

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.