Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | ppuh02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | ppuh02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF04539 | Sigma-70 region 3 | IPR007624 | RNA polymerase sigma-70 region 3 | 101 | 171 | 3.8E-11 |
PANTHER | PTHR30385 | SIGMA FACTOR F FLAGELLAR | - | - | 10 | 244 | 4.2E-49 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 225 | 236 | 3.8E-11 |
FunFam | G3DSA:1.20.140.160:FF:000001 | RNA polymerase sigma factor FliA | - | - | 91 | 242 | 1.3E-76 |
FunFam | G3DSA:1.10.1740.10:FF:000002 | RNA polymerase sigma factor FliA | - | - | 6 | 89 | 6.9E-41 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 47 | 60 | 3.8E-11 |
SUPERFAMILY | SSF88946 | Sigma2 domain of RNA polymerase sigma factors | IPR013325 | RNA polymerase sigma factor, region 2 | 10 | 92 | 6.02E-25 |
NCBIfam | TIGR02479 | JCVI: FliA/WhiG family RNA polymerase sigma factor | IPR012845 | RNA polymerase sigma factor, FliA/WhiG | 20 | 240 | 2.6E-82 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 210 | 225 | 3.8E-11 |
PIRSF | PIRSF000770 | SigK_SigE | IPR000943 | RNA polymerase sigma-70 | 3 | 244 | 1.1E-34 |
CDD | cd06171 | Sigma70_r4 | - | - | 183 | 237 | 4.39251E-13 |
Gene3D | G3DSA:1.20.140.160 | - | - | - | 91 | 242 | 1.9E-42 |
Gene3D | G3DSA:1.10.1740.10 | - | - | - | 7 | 89 | 1.8E-24 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 193 | 205 | 3.8E-11 |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 94 | 162 | 2.22E-12 |
NCBIfam | TIGR02937 | JCVI: sigma-70 family RNA polymerase sigma factor | IPR014284 | RNA polymerase sigma-70 like domain | 16 | 240 | 5.6E-34 |
Pfam | PF04545 | Sigma-70, region 4 | IPR007630 | RNA polymerase sigma-70 region 4 | 189 | 237 | 2.9E-18 |
Hamap | MF_00962 | RNA polymerase sigma factor FliA [fliA]. | IPR028617 | RNA polymerase sigma factor FliA | 6 | 243 | 66.054169 |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 168 | 243 | 2.06E-20 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 20 | 92 | 2.6E-18 |