Pseudomonas putida HB3267, B479_18605 (fliA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00962
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000770
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuh02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 101 171 3.8E-11
PANTHER PTHR30385 SIGMA FACTOR F FLAGELLAR - - 10 244 4.2E-49
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 225 236 3.8E-11
FunFam G3DSA:1.20.140.160:FF:000001 RNA polymerase sigma factor FliA - - 91 242 1.3E-76
FunFam G3DSA:1.10.1740.10:FF:000002 RNA polymerase sigma factor FliA - - 6 89 6.9E-41
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 47 60 3.8E-11
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 10 92 6.02E-25
NCBIfam TIGR02479 JCVI: FliA/WhiG family RNA polymerase sigma factor IPR012845 RNA polymerase sigma factor, FliA/WhiG 20 240 2.6E-82
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 210 225 3.8E-11
PIRSF PIRSF000770 SigK_SigE IPR000943 RNA polymerase sigma-70 3 244 1.1E-34
CDD cd06171 Sigma70_r4 - - 183 237 4.39251E-13
Gene3D G3DSA:1.20.140.160 - - - 91 242 1.9E-42
Gene3D G3DSA:1.10.1740.10 - - - 7 89 1.8E-24
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 193 205 3.8E-11
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 94 162 2.22E-12
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 16 240 5.6E-34
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 189 237 2.9E-18
Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. IPR028617 RNA polymerase sigma factor FliA 6 243 66.054169
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 168 243 2.06E-20
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 20 92 2.6E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.