Pseudomonas syringae pv. syringae B728a, Psyr_1896

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00969
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00969
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00969
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:000546 Transcription-repair-coupling factor - - 542 779 2.0E-122
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 782 989 3.64E-47
Gene3D G3DSA:2.40.10.170 - - - 483 541 0.0
Gene3D G3DSA:3.30.2060.10 - - - 128 213 1.4E-128
Hamap MF_00969 Transcription-repair-coupling factor [mfd]. IPR004576 Transcription-repair coupling factor 31 1109 27.934027
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 605 765 1.3E-18
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 478 989 0.0
Gene3D G3DSA:3.90.1150.50 - IPR037235 TRCF-like, C-terminal D7 domain 1005 1149 4.0E-40
NCBIfam TIGR00580 JCVI: transcription-repair coupling factor IPR004576 Transcription-repair coupling factor 147 1082 0.0
SUPERFAMILY SSF143517 TRCF domain-like IPR037235 TRCF-like, C-terminal D7 domain 994 1146 3.14E-44
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 542 781 0.0
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 804 909 6.8E-17
Pfam PF17757 UvrB interaction domain IPR041471 UvrB, interaction domain 128 217 1.9E-26
Pfam PF02559 CarD-like/TRCF domain IPR003711 CarD-like/TRCF, RNAP-interacting domain 480 575 1.3E-24
CDD cd18810 SF2_C_TRCF - - 789 938 3.57377E-78
CDD cd17991 DEXHc_TRCF - - 589 781 1.42415E-116
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 523 783 5.83E-62
SUPERFAMILY SSF141259 CarD-like IPR036101 CarD-like/TRCF, RNAP-interacting domain superfamily 470 548 1.7E-23
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 10 341 8.36E-105
PANTHER PTHR47964 ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC IPR047112 ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor 580 975 4.0E-129
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 826 910 3.0E-16
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 600 790 2.6E-34
SMART SM00982 TRCF_a_2_a IPR005118 Transcription-repair-coupling factor, C-terminal domain 1008 1108 2.6E-52
Gene3D G3DSA:3.40.50.11180 - - - 23 334 1.4E-128
FunFam G3DSA:3.40.50.300:FF:000300 Transcription-repair-coupling factor - - 780 990 2.4E-106
Gene3D G3DSA:3.40.50.11140 - - - 354 451 9.2E-31
Pfam PF03461 TRCF domain IPR005118 Transcription-repair-coupling factor, C-terminal domain 1009 1100 1.4E-27
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 351 465 1.68E-29
SMART SM01058 CarD_TRCF_2 IPR003711 CarD-like/TRCF, RNAP-interacting domain 479 576 8.9E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.