Pseudomonas syringae pv. syringae B728a, Psyr_1935

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03344 JCVI: type VI secretion system tube protein TssD/Hcp IPR008514 Type VI secretion system effector Hcp 1 140 8.0E-18
SUPERFAMILY SSF141452 Hcp1-like IPR036624 Hcp1-like superfamily 3 161 2.09E-43
Pfam PF05638 Type VI secretion system effector, Hcp IPR008514 Type VI secretion system effector Hcp 6 137 1.7E-35
Gene3D G3DSA:2.30.110.20 - IPR036624 Hcp1-like superfamily 3 162 1.1E-44
PANTHER PTHR36152 CYTOPLASMIC PROTEIN-RELATED - - 3 155 3.0E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.