Pseudomonas syringae pv. syringae B728a, Psyr_3674 (cobT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008939 | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.10210
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0009236 | cobalamin biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03160
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | 2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psb01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psb00860 | Porphyrin and chlorophyll metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | superpathway of adenosylcobalamin salvage from cobinamide II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | 5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.40.50.10210:FF:000001 | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - | - | 57 | 328 | 2.0E-119 |
| CDD | cd02439 | DMB-PRT_CobT | IPR003200 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 29 | 343 | 0.0 |
| Hamap | MF_00230 | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. | IPR017846 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, bacterial type | 12 | 347 | 36.724491 |
| Pfam | PF02277 | Phosphoribosyltransferase | IPR003200 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 12 | 345 | 2.9E-129 |
| NCBIfam | TIGR03160 | JCVI: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | IPR017846 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, bacterial type | 16 | 345 | 0.0 |
| SUPERFAMILY | SSF52733 | Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) | IPR036087 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily | 5 | 345 | 8.24E-119 |
| Gene3D | G3DSA:3.40.50.10210 | - | IPR036087 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily | 57 | 328 | 4.6E-128 |
| Gene3D | G3DSA:1.10.1610.10 | - | IPR023195 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal | 12 | 338 | 4.6E-128 |
| PANTHER | PTHR43463 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE | IPR003200 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 10 | 347 | 2.3E-107 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.