Pseudomonas syringae pv. syringae B728a, Psyr_3675 (cobU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043752 adenosylcobinamide kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc adenosylcobinamide-GDP biosynthesis from cobyrinate <i>a,c</i>-diamide InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc adenosylcobinamide-GDP salvage from cobinamide I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc adenosylcobinamideGDP salvage from cobinamide II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc superpathway of adenosylcobalamin salvage from cobinamide II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 3 169 1.34E-52
PANTHER PTHR34848 - IPR003203 Bifunctional adenosylcobalamin biosynthesis protein CobU/CobP 1 169 2.5E-65
CDD cd00544 CobU IPR003203 Bifunctional adenosylcobalamin biosynthesis protein CobU/CobP 4 166 3.29186E-74
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 169 3.4E-57
FunFam G3DSA:3.40.50.300:FF:001825 Bifunctional adenosylcobalamin biosynthesis protein - - 2 169 2.6E-73
Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IPR003203 Bifunctional adenosylcobalamin biosynthesis protein CobU/CobP 4 168 1.6E-59
PIRSF PIRSF006135 CobU IPR003203 Bifunctional adenosylcobalamin biosynthesis protein CobU/CobP 1 171 1.1E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.