Pseudomonas aeruginosa UCBPP-PA14, PA14_00680

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 85 3.5E-22
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 4 294 6.4E-89
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 5 84 1.19E-20
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 88 294 1.86E-51
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 62 7.8E-18
CDD cd08422 PBP2_CrgA_like - - 92 287 3.48107E-78
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 87 1.0E-21
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 291 1.0E-45
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 88 290 5.2E-70
Gene3D G3DSA:3.40.190.290 - - - 88 291 1.8E-67

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.