Pseudomonas aeruginosa UCBPP-PA14, PA14_01890 (pcaQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02424
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019619 3,4-dihydroxybenzoate catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02424
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02424
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 67 255 7.3E-27
TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ IPR012787 Pca transcription factor PcaQ 2 272 2.0E-100
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 65 2.5E-13
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 67 274 1.81E-32
PANTHER PTHR30346 TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED - - 1 275 9.9E-116
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 65 271 1.7E-32
Gene3D G3DSA:3.40.190.10 - - - 141 245 7.3E-27
PANTHER PTHR30346:SF9 LYSR FAMILY TRANSCRIPTIONAL REGULATOR-RELATED - - 1 275 9.9E-116
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 2 86 1.14E-12
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 2 37 4.0E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.