Pseudomonas aeruginosa UCBPP-PA14, PA14_05280 (yqgF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd16964
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00732
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. IPR005227 Putative pre-16S rRNA nuclease 8 143 24.793377
SMART SM00732 rnase_8s IPR006641 YqgF/RNase H-like domain 8 108 8.0E-40
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 9 141 1.82E-40
CDD cd16964 YqgF IPR005227 Putative pre-16S rRNA nuclease 10 127 2.16883E-47
NCBIfam TIGR00250 JCVI: Holliday junction resolvase RuvX IPR005227 Putative pre-16S rRNA nuclease 11 139 8.9E-40
Gene3D G3DSA:3.30.420.140 - IPR037027 YqgF/RNase H-like domain superfamily 9 144 2.6E-40
FunFam G3DSA:3.30.420.140:FF:000002 Putative pre-16S rRNA nuclease - - 7 143 1.9E-64
PANTHER PTHR33317 POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN IPR005227 Putative pre-16S rRNA nuclease 9 141 3.9E-24
Pfam PF03652 Holliday junction resolvase IPR005227 Putative pre-16S rRNA nuclease 10 140 1.8E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.