Pseudomonas aeruginosa UCBPP-PA14, PA14_05850

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 11 66 1.7E-19
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 81 6.56E-20
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 9 295 8.2E-70
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 6 85 2.8E-20
CDD cd08481 PBP2_GcdR_like - - 96 288 8.30992E-106
Gene3D G3DSA:3.40.190.10 - - - 164 261 8.1E-48
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 91 292 3.7E-40
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 94 295 3.8E-39
FunFam G3DSA:3.40.190.10:FF:000017 Glycine cleavage system transcriptional activator - - 164 261 2.8E-33
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 6 88 1.7E-29
Gene3D G3DSA:3.40.190.10 - - - 99 288 8.1E-48
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 5.9E-10
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 5.9E-10
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 5.9E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.