Pseudomonas aeruginosa UCBPP-PA14, PA14_06950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06170
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 6 139 5.4E-10
CDD cd00130 PAS IPR000014 PAS domain 153 252 7.1617E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 140 262 5.6E-13
Pfam PF13188 PAS domain IPR000014 PAS domain 14 68 8.8E-7
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 416 485 2.28E-20
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 440 456 2.1E-11
SMART SM00091 pas_2 IPR000014 PAS domain 267 336 0.081
SMART SM00091 pas_2 IPR000014 PAS domain 13 84 0.074
CDD cd00130 PAS IPR000014 PAS domain 276 376 2.33939E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 159 251 4.3E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 255 377 1.92E-15
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 456 468 2.1E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 263 386 1.6E-8
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 426 440 2.1E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 140 252 2.9E-13
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 400 483 1.9E-24
Coils Coil Coil - - 255 275 -
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 423 480 3.8E-24
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 426 482 4.21573E-17
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 426 480 5.7E-18
Pfam PF13426 PAS domain IPR000014 PAS domain 281 377 6.0E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 10 135 4.54E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 136 251 2.79E-14
Gene3D G3DSA:3.30.450.20 PAS domain - - 254 376 2.0E-16
SMART SM00091 pas_2 IPR000014 PAS domain 142 209 0.063
PANTHER PTHR43214 TWO-COMPONENT RESPONSE REGULATOR IPR039420 Transcriptional regulatory protein WalR-like 4 484 5.5E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.