Pseudomonas aeruginosa UCBPP-PA14, PA14_07520 (rpoD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.220.120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class
Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 591 602 6.5E-31
Pfam PF04546 Sigma-70, non-essential region IPR007631 RNA polymerase sigma factor 70, non-essential domain 139 352 4.9E-65
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 513 615 9.16E-27
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 98 128 7.4E-13
CDD cd06171 Sigma70_r4 - - 545 603 6.81896E-12
Gene3D G3DSA:1.10.601.10 RNA Polymerase Primary Sigma Factor - - 113 452 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 193 216 -
FunFam G3DSA:1.10.10.10:FF:000002 RNA polymerase sigma factor SigA - - 456 532 1.2E-43
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 407 420 6.5E-31
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 576 591 6.5E-31
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 462 538 2.2E-30
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 533 617 1.2E-36
FunFam G3DSA:1.10.220.120:FF:000001 RNA polymerase sigma factor RpoD - - 4 66 5.2E-32
MobiDBLite mobidb-lite consensus disorder prediction - - 170 220 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 555 567 6.5E-31
Coils Coil Coil - - 577 597 -
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 379 604 3.9E-37
NCBIfam TIGR02393 JCVI: RNA polymerase sigma factor RpoD IPR012760 RNA polymerase sigma factor RpoD, C-terminal 379 615 9.5E-122
FunFam G3DSA:1.10.601.10:FF:000002 RNA polymerase sigma factor RpoD - - 113 452 0.0
Gene3D G3DSA:1.10.220.120 - IPR042189 Sigma-70 factor, region 1.1 superfamily 4 66 3.4E-29
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 431 439 6.5E-31
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 456 532 1.1E-37
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 551 604 8.0E-19
Pfam PF03979 Sigma-70 factor, region 1.1 IPR007127 RNA polymerase sigma factor 70, region 1.1 6 83 8.6E-30
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 383 452 1.5E-21
Coils Coil Coil - - 334 382 -
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO - - 11 615 0.0
FunFam G3DSA:1.10.10.10:FF:000004 RNA polymerase sigma factor SigA - - 533 616 9.3E-41
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 115 450 7.72E-105
Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. IPR028630 RNA polymerase sigma factor RpoD 6 616 46.887291
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 456 529 1.0E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.