Pseudomonas aeruginosa UCBPP-PA14, PA14_07840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00622
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00156
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 143 208 23.086
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 164 180 1.7E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 150 164 1.7E-10
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 4 120 37.506
ProSitePatterns PS00622 LuxR-type HTH domain signature. IPR000792 Transcription regulator LuxR, C-terminal 164 191 -
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 5 117 4.5E-27
Gene3D G3DSA:3.40.50.12740 3 210 4.3E-59
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 180 192 1.7E-10
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 3 133 3.13E-33
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 150 206 1.05122E-15
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 149 204 1.7E-19
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 3 116 3.4E-30
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 147 204 1.4E-19
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 138 209 3.4E-19
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 6 120 1.20136E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.