Pseudomonas aeruginosa UCBPP-PA14, PA14_46850

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06170
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR44688 - - - 150 201 2.2E-11
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 124 213 1.6E-13
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 145 212 6.46E-15
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 151 208 4.0E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 154 168 1.0E-9
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 154 199 1.14458E-11
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 154 198 2.2E-11
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 184 196 1.0E-9
Pfam PF08448 PAS fold IPR013656 PAS fold-4 28 130 7.6E-6
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 168 184 1.0E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.