Pseudomonas aeruginosa UCBPP-PA14, PA14_51820 (aspS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01336
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01042
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016874 ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00459
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006418 tRNA aminoacylation for protein translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01042
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class
Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00970 Aminoacyl-tRNA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 107 2.5E-39
Pfam PF01336 OB-fold nucleic acid binding domain IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type 19 102 1.7E-16
Gene3D G3DSA:3.30.1360.30 - IPR004115 GAD-like domain superfamily 274 423 0.0
SUPERFAMILY SSF55261 GAD domain-like IPR004115 GAD-like domain superfamily 292 422 1.26E-44
PRINTS PR01042 Aspartyl-tRNA synthetase signature IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb 193 205 4.7E-27
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 113 582 0.0
Pfam PF00152 tRNA synthetases class II (D, K and N) IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) 121 559 3.1E-108
CDD cd04317 EcAspRS_like_N IPR047089 Aspartate-tRNA ligase, type 1, anticodon recognition domain 3 137 1.60441E-77
PANTHER PTHR22594 ASPARTYL/LYSYL-TRNA SYNTHETASE - - 5 561 2.5E-118
NCBIfam TIGR00459 JCVI: aspartate--tRNA ligase IPR004524 Aspartate-tRNA ligase, type 1 1 583 0.0
CDD cd00777 AspRS_core IPR047090 Aspartate-tRNA ligase, type 1, core domain 141 560 0.0
PRINTS PR01042 Aspartyl-tRNA synthetase signature IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb 475 491 4.7E-27
Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. IPR004524 Aspartate-tRNA ligase, type 1 2 585 33.861851
Pfam PF02938 GAD domain IPR029351 GAD domain 310 409 1.4E-31
PRINTS PR01042 Aspartyl-tRNA synthetase signature IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb 210 223 4.7E-27
PRINTS PR01042 Aspartyl-tRNA synthetase signature IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb 519 533 4.7E-27
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 109 585 1.33E-102
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 2 106 7.43E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.