Pseudomonas aeruginosa UCBPP-PA14, PA14_53090

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06124 cupin_NimR-like_N - - 16 110 8.85256E-36
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 210 257 3.36E-7
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 14 177 3.26E-14
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 178 254 1.3E-20
Gene3D G3DSA:1.10.10.60 - - - 152 260 2.8E-21
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 153 256 8.6E-34
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 24 109 8.8E-7
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 5 258 3.5E-75
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 9 97 1.3E-9
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 172 253 1.2E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.