Pseudomonas aeruginosa UCBPP-PA14, PA14_53140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 380 | 538 | 2.76442E-61 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 558 | 802 | 3.58676E-86 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 21 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 375 | 539 | 1.7E-43 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 559 | 797 | 6.9E-61 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 368 | 540 | 2.5E-64 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 558 | 801 | 4.97E-73 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 237 | 366 | 3.32E-18 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 256 | 365 | 7.7E-12 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 250 | 316 | 3.4E-7 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 374 | 542 | 3.4E-47 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 554 | 804 | 8.3E-83 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 369 | 542 | 5.3E-57 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 384 | 542 | 2.35E-49 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 379 | 536 | 3.0E-45 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 238 | 366 | 4.3E-20 |
| PANTHER | PTHR33121 | CYCLIC DI-GMP PHOSPHODIESTERASE PDEF | - | - | 88 | 800 | 0.0 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 256 | 374 | 3.9E-14 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 552 | 802 | 2.6E-69 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 259 | 365 | 3.5629E-10 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.