Pseudomonas aeruginosa UCBPP-PA14, PA14_71780

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01418
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30514
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01418
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1901135 carbohydrate derivative metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0097367 carbohydrate derivative binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01380
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000060 DNA-binding transcriptional regulator HexR - - 1 77 1.1E-32
Gene3D G3DSA:3.40.50.10490 - - - 93 276 5.2E-37
Pfam PF01380 SIS domain IPR001347 SIS domain 125 252 5.1E-16
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 1 76 1.0E-20
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 77 5.9E-24
Pfam PF01418 Helix-turn-helix domain, rpiR family IPR000281 Helix-turn-helix protein RpiR 1 76 7.6E-25
PANTHER PTHR30514 GLUCOKINASE IPR047640 HTH-type transcriptional regulator RpiR-like 1 277 2.3E-91
CDD cd05013 SIS_RpiR IPR035472 RpiR-like, SIS domain 117 253 3.04027E-42
FunFam G3DSA:3.40.50.10490:FF:000032 RpiR family transcriptional regulator - - 93 276 5.7E-120
SUPERFAMILY SSF53697 SIS domain IPR046348 SIS domain superfamily 84 278 2.43E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.