Pseudomonas aeruginosa UCBPP-PA14, PA14_72560 (np20)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071294 cellular response to zinc ion
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0071579 regulation of zinc ion transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0006882 cellular zinc ion homeostasis
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Molecular Function GO:0003677 DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:1900376 regulation of secondary metabolite biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 12426334
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000137 Zinc uptake transcriptional repressor - - 17 105 6.6E-39
FunFam G3DSA:3.30.1490.190:FF:000007 Fur family transcriptional regulator - - 106 164 8.1E-26
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 17 105 2.8E-26
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 29 159 4.25E-29
Pfam PF01475 Ferric uptake regulator family IPR002481 Ferric-uptake regulator 35 154 2.3E-11
Gene3D G3DSA:3.30.1490.190 - IPR043135 Ferric-uptake regulator, C-terminal domain 106 166 2.0E-14
CDD cd07153 Fur_like IPR002481 Ferric-uptake regulator 43 158 1.18305E-22
PANTHER PTHR33202 ZINC UPTAKE REGULATION PROTEIN IPR002481 Ferric-uptake regulator 19 166 1.4E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.