Pseudomonas stutzeri DSM 10701, PSJM300_06210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0009058 | biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF00793
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009073 | aromatic amino acid family biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR21225
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR21225
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psj01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 3-dehydroquinate biosynthesis I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psj01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psj01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psj01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psj00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psj02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PIRSF | PIRSF001361 | DAHP_synthase | IPR006219 | DAHP synthase, class 1 | 21 | 365 | 0.0 |
| NCBIfam | TIGR00034 | JCVI: 3-deoxy-7-phosphoheptulonate synthase | IPR006219 | DAHP synthase, class 1 | 31 | 363 | 4.5E-130 |
| Pfam | PF00793 | DAHP synthetase I family | IPR006218 | DAHP synthetase I/KDSA | 63 | 355 | 1.1E-79 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 28 | 365 | 0.0 |
| SUPERFAMILY | SSF51569 | Aldolase | - | - | 32 | 362 | 1.78E-121 |
| PANTHER | PTHR21225 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE | IPR006219 | DAHP synthase, class 1 | 31 | 363 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.