Pseudomonas stutzeri DSM 10701, PSJM300_06250

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01612
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01612
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033890 ribonuclease D activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 196 295 6.2E-27
Pfam PF00570 HRDC domain IPR002121 HRDC domain 214 281 1.7E-15
Pfam PF01612 3'-5' exonuclease IPR002562 3'-5' exonuclease domain 6 172 2.6E-39
NCBIfam TIGR01388 JCVI: ribonuclease D IPR006292 Ribonuclease D 7 372 0.0
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 305 373 6.9E-8
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 3 190 9.7E-61
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 195 301 3.71E-31
SMART SM00474 35exoneu6 IPR002562 3'-5' exonuclease domain 5 173 2.0E-39
CDD cd06142 RNaseD_exo - - 13 189 1.09462E-72
Hamap MF_01899 Ribonuclease D [rnd]. IPR006292 Ribonuclease D 5 371 41.770096
SMART SM00341 hrdc7 IPR002121 HRDC domain 211 291 6.3E-11
PANTHER PTHR47649 RIBONUCLEASE D - - 2 372 2.5E-122
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 4 210 5.31E-63
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 296 372 8.89E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.