Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3969

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pba00780	Biotin metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pba01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pba01212	Fatty acid metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pba00061	Fatty acid biosynthesis	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pba01040	Biosynthesis of unsaturated fatty acids	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	178	195	9.3E-40
FunFam	G3DSA:3.40.50.720:FF:000290	SDR family oxidoreductase	-	-	1	247	1.5E-109
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	IPR002347	Short-chain dehydrogenase/reductase SDR	157	176	8.6E-14
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	IPR036291	NAD(P)-binding domain superfamily	8	246	5.75E-81
SMART	SM00822	This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.	-	-	9	188	3.6E-4
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	85	96	9.3E-40
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	IPR002347	Short-chain dehydrogenase/reductase SDR	85	96	8.6E-14
PANTHER	PTHR43639	OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)	-	-	3	245	8.4E-69
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	IPR002347	Short-chain dehydrogenase/reductase SDR	136	144	8.6E-14
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	130	146	9.3E-40
Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	-	-	17	246	7.6E-63
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	10	27	9.3E-40
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	210	230	9.3E-40
CDD	cd05233	SDR_c	-	-	11	243	1.12845E-75
Gene3D	G3DSA:3.40.50.720	-	-	-	1	247	2.1E-83
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	IPR002347	Short-chain dehydrogenase/reductase SDR	157	176	9.3E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.