Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00313
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00313
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00313 JCVI: cobyric acid synthase CobQ IPR004459 Cobyric acid synthase CobQ 4 475 0.0
CDD cd01750 GATase1_CobQ IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 258 440 6.88229E-69
PANTHER PTHR21343 DETHIOBIOTIN SYNTHETASE - - 1 482 0.0
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 255 399 9.9E-15
Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain IPR011698 CobB/CobQ-like glutamine amidotransferase 250 433 2.2E-58
Hamap MF_00028 Cobyric acid synthase [cobQ]. IPR004459 Cobyric acid synthase CobQ 1 483 214.603592
Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain 4 230 4.8E-20
CDD cd05389 CobQ_N IPR047045 Cobyric acid synthase, N-terminal domain 3 224 1.45948E-121
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 237 1.5E-58
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 237 4.48E-55
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 250 443 1.55E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.