Pseudomonas protegens CHA0, PFLCHA0_c60400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF06744 Type VI secretion protein IcmF C-terminal IPR010623 Type VI secretion system IcmF, C-terminal 915 1116 5.6E-68
Pfam PF14331 ImcF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 190 447 7.5E-99
TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF IPR017731 Type VI secretion system, IcmF 15 1166 0.0
Coils Coil 88 111 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 120 289 2.83E-10
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 499 792 1.0E-83

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.