Pseudomonas protegens CHA0, PFLCHA0_c60410

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 403 423 -
Gene3D G3DSA:3.30.1330.60 IPR036737 OmpA-like domain superfamily 288 441 7.8E-53
TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain IPR017733 Type VI secretion system peptidoglycan-associated domain 299 435 6.7E-51
MobiDBLite mobidb-lite consensus disorder prediction 1 50 -
TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family IPR017732 Type IV / VI secretion system, DotU 58 267 6.1E-74
ProSiteProfiles PS51123 OmpA-like domain profile. IPR006665 OmpA-like domain 319 439 45.639
MobiDBLite mobidb-lite consensus disorder prediction 27 45 -
Gene3D G3DSA:1.25.40.590 IPR038522 Type IV / VI secretion system, DotU superfamily 56 213 4.6E-53
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 331 435 3.70747E-34
SUPERFAMILY SSF103088 IPR036737 OmpA-like domain superfamily 320 435 2.88E-28
MobiDBLite mobidb-lite consensus disorder prediction 1 18 -
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 331 429 3.3E-15
Pfam PF09850 Type VI secretion system protein DotU IPR017732 Type IV / VI secretion system, DotU 59 261 7.1E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.