Pseudomonas protegens CHA0, PFLCHA0_c60520 (clpV)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019538 protein metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF81923
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA 595 743 1.05946E-14
Gene3D G3DSA:1.10.8.60 793 889 2.9E-11
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 732 746 3.2E-30
SUPERFAMILY SSF81923 IPR036628 Clp, N-terminal domain superfamily 12 131 2.75E-17
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 570 866 9.27E-64
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 670 688 3.2E-30
SMART SM00382 IPR003593 AAA+ ATPase domain 229 374 3.1E-10
Gene3D G3DSA:3.40.50.300 375 568 1.0E-42
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 5.0E-9
SMART SM00382 IPR003593 AAA+ ATPase domain 621 780 3.8E-8
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 699 717 3.2E-30
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 620 786 6.4E-39
Coils Coil 474 494 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 514 1.75E-70
CDD cd00009 AAA 212 367 5.71358E-15
Gene3D G3DSA:3.40.50.300 184 373 1.0E-62
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 625 643 3.2E-30
Gene3D G3DSA:1.10.1780.10 IPR036628 Clp, N-terminal domain superfamily 1 161 8.5E-43
Gene3D G3DSA:3.40.50.300 574 791 1.5E-66
Coils Coil 527 547 -
ProSitePatterns PS00870 Chaperonins clpA/B signature 1. IPR018368 ClpA/B, conserved site 1 325 337 -
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 793 867 1.5E-13
Coils Coil 443 463 -
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 465 1.6E-28
SMART SM01086 IPR019489 Clp ATPase, C-terminal 793 885 2.6E-12
TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family IPR017729 Type VI secretion system, ATPase ClpV1 13 877 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.