Pseudomonas protegens CHA0, PFLCHA0_c60530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pprc03070 | Bacterial secretion system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.30.110.50 | 14 | 332 | 1.5E-130 | |||
| SUPERFAMILY | SSF69349 | 442 | 617 | 2.82E-39 | |||
| Gene3D | G3DSA:2.40.50.230 | IPR037026 | Vgr protein, OB-fold domain superfamily | 355 | 457 | 3.3E-49 | |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 486 | - | ||
| Pfam | PF05954 | Phage late control gene D protein (GPD) | 30 | 329 | 5.8E-103 | ||
| TIGRFAM | TIGR01646 | vgr_GE: Rhs element Vgr protein | IPR006533 | Type VI secretion system, RhsGE-associated Vgr protein | 24 | 506 | 0.0 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 483 | - | ||
| SUPERFAMILY | SSF69279 | 189 | 363 | 3.91E-36 | |||
| TIGRFAM | TIGR03361 | VI_Rhs_Vgr: type VI secretion system Vgr family protein | IPR017847 | Type VI secretion system, RhsGE-associated Vgr family subset | 11 | 523 | 0.0 |
| SUPERFAMILY | SSF69279 | 12 | 184 | 3.49E-60 | |||
| Gene3D | G3DSA:3.55.50.10 | 98 | 189 | 1.5E-130 | |||
| Gene3D | G3DSA:3.30.1920.30 | 224 | 286 | 1.5E-130 | |||
| SUPERFAMILY | SSF69255 | 364 | 452 | 3.66E-36 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.