Pseudomonas protegens CHA0, PFLCHA0_c60550 (rhsB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.180.10.10 1006 1349 4.6E-42
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 799 828 1.5E-5
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 609 648 8.6E-8
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 1134 1168 0.0023
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 799 835 1.7E-7
Pfam PF05488 PAAR motif IPR008727 PAAR motif 182 226 1.3E-7
Gene3D G3DSA:2.60.200.60 171 237 4.1E-10
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 658 692 4.6E-5
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 781 818 0.001
Gene3D G3DSA:3.90.930.1 726 866 5.3E-11
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 900 928 1.0E-4
Gene3D G3DSA:3.90.930.1 575 725 9.5E-7
SUPERFAMILY SSF63829 594 846 1.31E-7
MobiDBLite mobidb-lite consensus disorder prediction 122 152 -
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 715 751 1.3E-6
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 499 535 2.2E-6
Pfam PF03527 RHS protein IPR001826 RHS protein 1244 1281 7.0E-17
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 820 856 7.5E-6
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 736 773 1.8E-6
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 673 709 2.1E-8
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 820 860 7.4E-7
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 736 776 5.1E-6
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 499 535 0.0019
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 694 726 3.1E-4
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1318 1337 5.9E-13
CDD cd14742 PAAR_RHS 100 237 2.32439E-24
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 614 644 1.6E-6
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1238 1258 5.9E-13
TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain IPR022385 Rhs repeat-associated core 1271 1349 1.3E-27
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 588 625 9.2E-5
TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) IPR006530 YD repeat 900 932 0.001
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1295 1315 5.9E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.