Pseudomonas protegens CHA0, PFLCHA0_c60610 (hupA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00411	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0030527	structural constituent of chromatin	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00411	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:4.10.520.10:FF:000004	HU family DNA-binding protein	-	-	1	90	3.2E-60
Coils	Coil	Coil	-	-	11	31	-
SUPERFAMILY	SSF47729	IHF-like DNA-binding proteins	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	1	90	1.27E-31
CDD	cd13831	HU	-	-	3	87	1.13751E-41
Gene3D	G3DSA:4.10.520.10	-	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	1	90	7.7E-33
PRINTS	PR01727	Prokaryotic integration host factor signature	IPR000119	Histone-like DNA-binding protein	58	71	1.2E-16
PRINTS	PR01727	Prokaryotic integration host factor signature	IPR000119	Histone-like DNA-binding protein	74	88	1.2E-16
SMART	SM00411	bhlneu	IPR000119	Histone-like DNA-binding protein	1	90	1.2E-38
PRINTS	PR01727	Prokaryotic integration host factor signature	IPR000119	Histone-like DNA-binding protein	40	55	1.2E-16
Pfam	PF00216	Bacterial DNA-binding protein	IPR000119	Histone-like DNA-binding protein	1	90	1.8E-33
PANTHER	PTHR33175	DNA-BINDING PROTEIN HU	IPR000119	Histone-like DNA-binding protein	2	89	1.2E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.